shopify payment gateways

Best Shopify Payment Gateways for Shopify 2024

Last updated: 3 May, 2024

Payment gateways set the foundation for every transaction on ecommerce stores. Without Shopify payment gateways, merchants cannot receive and process payments from customers, along with all the transaction information that comes with it.

Payment gateways for Shopify protect both the merchant and the customer by providing secure credit and debit card payments, both online and physically if Point-of-Sale is used.

There are several factors that are needed to be considered when choosing which Shopify payment gateway to use. Things such as price, setup time and location of the payment gateway can vary quite widely and therefore some may be more suitable for others depending on the nature of your business. This article goes through the ins and outs of everything you need to know when choosing the best Shopify payment gateway for your online store with the latest and greatest technology in 2024. Let's get started!

What Shopify Payment Gateway Options are out there?

The ecommerce and Shopify marketplace has grown exponentially over the past decade, creating rising competition between different industries including Shopify payment gateway technologies. The most commonly used payment gateway for Shopify tends to be Shopify Payments which comes ready-to-use when setting up a store within the Shopify platform. Third-party payment providers which can be integrated into Shopify are also available and are commonly used across a multitude of platforms around the world. Implementing some of these can create convenience and flexibility for those users who are already set up on these platforms.

Certain payment gateways are commonly preferred in different parts of the world, and all have their own pricing structures and levels of ease-of-use. We will go into more detail comparing each popular payment provider individually.

Third-party Shopify payment gateways include:
•Amazon Pay
•Shop Pay

1. Shopify Payments

Shopify’s Payments is Shopify’s in-built payment gateway which eliminates the need and hassle for merchants to set up any third-party payment provider. An added benefit of using Shopify payments is that it is automatically set up to accept some of the major payment providers. Since Shopify payments is natively integrated within the Shopify platform, transactional data such as orders, payments and payouts can be viewed and managed within the Shopify admin panel. This is something which cannot be immediately accessed with third-party gateways which have to be viewed externally through their respective admin areas.

Further benefits of using Shopify Payments is that it comes with integrated risk tools which can help identify suspicious orders. In addition to this, the platform offers card readers free of charge for merchants who want to integrate Point-of-Sale payments in-person, perfect for brick and mortar businesses.

Once customers make payments, it can take up to 3 business days to reach the merchant. The card fees for transactions differ slightly depending on which Shopify plan the merchant is on. For merchants on the Basic plan, the card rate is 2.2% + £0.20, for the standard Shopify plan it is 1.9% + £0.20, or for the Advanced Shopify plan it is 1.6% + £0.20, with no other hidden costs.

2. PayPal

PayPal is perhaps the most popular Shopify third-party payment gateway, with 311 billion transactions being made through the app in total by the end of Q2 2021. PayPal is simple and quick to set up, and has free and paid options for merchant accounts. One of the main advantages of using PayPal as a payment gateway for Shopify is the support system that comes with it should customers or merchants come across any problems with transactions made through the platform. Other advantages include the fact it accepts international payments, is mobile optimised, and allows merchants to be paid directly through their PayPal account.

Since PayPal is one of Shopify’s default payment gateways, a PayPal Express Checkout account is given to merchants with the email they signed up for the Shopify store, meaning payments can be received for orders made through PayPal once this account is set up.

Merchants are charged transaction fees whenever a transaction is paid for using the PayPal service- these fees are 1.9% to 3.4% per sale, so these will need to be considered when calculating profit margins for your Shopify store. These charges can be avoided if the merchants have Shopify Payments also activated, so worth doing for improved margins of your online store.

3. Stripe

Stripe is a flexible Shopify payment gateway that gives merchants the ability to accept transactions both in-person and online. It comes with a range of tools to help customise the checkout process, offering integration of up to 300+ tools. Shopify Payments is actually powered by Stripe, and so is not available as a separate payment gateway for those countries where Shopify Payments is also available such as the UK. However, integrating Stripe is a great option for merchants in regions where Shopify Payments is not offered.

Benefits to using the Stripe platform is that it is an easy-to-setup Shopify payment gateway which can be up and running in under a day, and the fact that in-person payment transactions are relatively cheap at 1.4% of the sale + £0.10 for European cards, or 2.9% + £0.10 for non-European cards, making it a best Shopify payment gateway option for merchants who deal with a lot of European customers, and/or want their store up quickly.

It is worth noting however that in-person transactions require merchants teo purchase a card reader which Stripe can provide for £49 for the mobile card reader, or £179 for the touchscreen card reader, however there are no ongoing costs or complicated rates after this.

4. Amazon Pay

Amazon has been the king of ecommerce over the past decade. With over 200 million users around, integrating Amazon Pay into your Shopify store allows a vast amount of customers to make purchases quickly and easily using their Amazon account details. On top of this, the Amazon brand is highly trusted, giving buyers confidence when checking out on Shopify stores and websites of any size.

Merchants can integrate Amazon Pay onto their Shopify stores if they have an existing Amazon Professional Seller account. To maintain this account, Amazon charges £25/month. Additional fees per transaction apply which are less competitive than other Shopify payment gateways which can be a deterrent to smaller merchants. Money from customer payments can also take a few days to reach the merchant’s account, making it not the best Shopify payment gateway for low volume selling businesses that rely more heavily on short-term cash inflows.

Fees per sale are 2.9% + $0.30 if the transaction was made domestically on website or mobile, increasing to 3.9% + $0.30 if the transaction was made internationally. Transactions made through Alexa smart assistant are 4% + $0.30 for domestic, and 5% + $0.30 for international sales. For organisations involved with charity, fees are 2.2% + $0.30 for domestic transactions and 3.2% + $0.30 for ones made internationally.

5. Klarna

Klarna is regarded as one of the best Shopify payment gateways to use for its ‘buy now pay later’ purchase model. This model gives customers the ability to split the cost of transactions into 3 interest-free installments. Flexibility to customers is given with up to 36 months to pay. Klarna is therefore beneficial for converting customers which require the extra flexibility with finances to follow through with their purchases, increasing merchant sale volume. What’s more is that this is at no risk to the merchant- even if the customer is unable to pay off their debt to Klarna, the merchant still receives the full amount.

Fees per transaction start are competitive at 1.9% per sale + £0.20. These fees are reduced with higher sales volume, making Klarna one of the best Shopify payment gateways for merchants that deal with consistently high sales numbers.

6. Shop Pay

Shop Pay is a convenient payment gateway which allows customers to save their payment information, along with their shipping address and billing information for a faster checkout every time they purchase from a Shopify store. This payment gateway, similar to PayPal, makes the checkout process easier and speeds it along so that customers are more inclined to make repeat pruchases.

Shop Pay also offers an installment/buy now pay later model which is inspired by Klarna. This Shopify payment gateway offers customers the option to either pay for their purchases in full at checkout, or split the purchase into four interest-free installments for orders that are valued between $50 and $3000. A bonus is that there are no additional interest rates, late fees, or other charges passed onto customers.

An advantage of using Shop Pay over Klarna is that it is fully integrated as part of Shopify, meaning customers do not redirect away from the merchants store. Making it the best Shopify payment gateway for retaining customers on your website. The merchant receives full payment once the order is completed, minus the fee to use the Shop Pay service.


There are quite a few big players in the payment gateway market, making it difficult to choose one single best Shopify payment gateway. Each has their own advantages and disadvantages, but depending on the size and nature of your Shopify store, the benefits of some of the options might be more significant than the others. For example, merchants who require the best protection and access to customer support will likely find PayPal to be the best Shopify payment gateway for their store. Shopify stores with high sales volumes have a preference for Amazon Pay or Klarna, and merchants who have in-person sales in addition to sales on their website might prefer to use Stripe. Shopify payments and Shop Pay are also good all-rounders for Shopify merchants of any size or nature.

Factors that may affect your decision can include the time it takes to set up the payment gateway, the amount of time it takes for payments to clear and reach your payment account, the fees for transactions, and the support offered by the payment gateway. Of course, if you have trouble deciding on the best Shopify payment gateway to use for your store, you can always utilise a mixture of the options, giving customers a choice based on their preference, maximising the conversions for your Shopify store.

If you have any queries or require assistance with setting up payment gateways for your Shopify store, get in contact with us. Charle are a leading Shopify & Shopify Plus agency who design and develop strategic ecommerce websites that engage customers and build with cutting edge Shopify technology.

Shopify Payment Gateways: Closing Comments

In the world of e-commerce, payment gateways play a pivotal role in shaping the checkout experience for shoppers across the globe. Shopify, with its wide variety of supported payment methods, has become a trusted partner for store owners of all sizes, whether they're in Ireland, Canada, New Zealand, Australia, Singapore, France, Germany, or anywhere else.

For businesses targeting a diverse international audience, offering familiar payment solutions is key. Shopify integrates with major credit card companies like Visa, Mastercard, American Express, and Discover, ensuring that customer transactions run smoothly. Fraud prevention is top of mind for store owners, and Shopify understands this concern. Robust fraud detection and protection mechanisms are integrated into the payment processing system, offering peace of mind to businesses and shoppers alike. With PCI compliance, reputation authentication, and fraud detection APIs in place, Shopify's software keeps a watchful eye on customer transactions.

The popularity of Shopify's payment solutions extends beyond its checkout interface. It also serves the point of sale needs of businesses, allowing them to accept payments in-store using their mobile devices. This versatility caters to a wide audience, from small businesses to multinational companies. Moreover, Shopify provides valuable resources and pricing transparency to meet the unique needs of each store owner. From pricing resources to trial periods and cancellation policies, they offer flexibility in a way that empowers businesses to track and manage their inventory and tax responsibilities efficiently.

Shopify Payment Gateways FAQs

Q: What is a payment gateway on Shopify?
A: A payment gateway on Shopify is a service that allows online stores to accept payments from customers. It facilitates the secure transfer of payment information between the customer, the merchant (you), and the financial institutions.

Q: How do I set up a payment gateway on Shopify?
A: To set up a payment gateway on Shopify, go to your Shopify admin, navigate to "Settings," then "Payments." From there, you can choose a payment gateway and follow the on-screen instructions to configure it.

Q: Which payment gateways are supported by Shopify?
A: Shopify supports a wide range of payment gateways, including popular options like PayPal, Stripe, Square, and many more. The availability of specific gateways may depend on your location.

Q: Are there any transaction fees associated with using Shopify payment gateways?
A: Yes, Shopify charges transaction fees on top of the fees charged by your selected payment gateway. The transaction fee amount varies depending on your Shopify plan, with lower fees for higher-tier plans.

Q: Can I use multiple payment gateways on my Shopify store?
A: Yes, you can configure multiple payment gateways on your Shopify store. This can be useful for offering customers more payment options or for handling different types of transactions.

Q: Do I need a merchant account to use Shopify payment gateways?
A: In most cases, you don't need a separate merchant account when using Shopify payment gateways. Shopify acts as both the payment gateway and the payment processor for your transactions.

Q: How long does it take for funds to be deposited into my bank account after a sale?
A: The time it takes for funds to be deposited into your bank account can vary depending on the payment gateway you're using. Typically, it takes 2-7 business days for funds to be transferred to your bank account.

Q: Can I customise the look and feel of the payment page during checkout?
A: Shopify allows some degree of customisation for the checkout page, but the level of customisation can vary depending on your plan. You can add your logo and make some design adjustments.

Q: Are there any restrictions on the types of products I can sell with certain payment gateways?
A: Some payment gateways have restrictions on the types of products they support. For example, certain gateways may have policies against the sale of adult content, firearms, or other specific categories. It's important to check with your chosen gateway for their guidelines.

Q: What security measures are in place to protect customer payment information?
A: Shopify takes security seriously and uses industry-standard encryption and security protocols to protect customer payment information. Additionally, many payment gateways also have their own security measures in place.

Q: Can I accept international payments with Shopify payment gateways?
A: Yes, you can accept international payments with most Shopify payment gateways. However, you may need to configure your gateway settings to accept multiple currencies and be aware of any currency conversion fees.

Q: What happens if a customer's payment is declined?
A: If a customer's payment is declined, they will receive an error message during checkout. They can then try a different payment method or contact their bank for more information.

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